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Supermicro SYS-5039MS-H12TRF SuperServer Barebone - 12-Node MicroCloud - 3U Rackmount - Intel Xeon LGA-1151 - 64GB DDR4 - 2 x 2000W PSU

SKU: SYS-5039MS-H12TRF
UPC: 672042211678
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MSRP: $11,212.95
$11,212.95
$9,797.99
Save: $1,414.96 (12.62%)
Warranty Information: 3 Year
Condition: New
Width: 44.45 (cm)
Height: 13.23 (cm)
Depth: 74.93 (cm)

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Product Features

Description

Product Overview

The Supermicro SuperServer SYS-5039MS-H12TRF is a high-density server barebone system engineered for scalable enterprise and data center environments. This 12-node MicroCloud platform consolidates multiple compute nodes into a single 3U rack-mountable chassis, delivering exceptional space efficiency and management simplicity.

Built around Intel's C236 chipset and supporting Intel Xeon processors in the LGA-1151 socket, this barebone provides a robust foundation for demanding workloads. With support for up to 64GB of DDR4-2133 memory across four slots per node, the system ensures responsive performance for virtualization, cloud hosting, and high-throughput applications.

Relevant factors for this section include Number of Nodes, Number of Processors Supported, Processor Socket, Chipset Manufacturer. When those points are considered together, they give buyers a clearer picture of how the product is equipped, how it fits into deployment, and what kind of day-to-day role it is meant to support.

Dimensions
Width
17.50" (444.50 mm)
Depth
29.50" (749.30 mm)
Height
3U
Weight
131.99 lb (59870 g)
Compute Platform
Processor Support1 x Intel Xeon (Socket H4 LGA-1151)
Memory64 GB DDR4-2133 (4 slots)
ChipsetIntel C236
Storage & Connectivity
SATA Interfaces6 x Serial ATA/600
USB Ports3 total (1 x USB 3.0)
NetworkGigabit Ethernet
Power & Physical
Power Supplies2 x 2000W (redundant)
Form Factor3U Rack-mountable
ColorBlack

Technical Overview

This SuperServer barebone integrates advanced server technologies into a cohesive, ready-to-configure platform. Each of the 12 nodes is built on a Super X11SSE-F motherboard, providing dedicated compute resources with independent memory and storage pathways.

The system features six Serial ATA/600 interfaces per node, enabling fast data transfer for direct-attached storage configurations. Network connectivity is handled by Gigabit Ethernet controllers, ensuring reliable high-speed uplinks for clustered or distributed deployments.

Relevant factors for this section include Number of Nodes, Number of Processors Supported, Processor Socket, Chipset Manufacturer. When those points are considered together, they give buyers a clearer picture of how the product is equipped, how it fits into deployment, and what kind of day-to-day role it is meant to support.

A strong technical summary explains how the product's interfaces, hardware profile, and operating characteristics work together in real deployment. Buyers often need this context to confirm compatibility with existing devices, expected performance in daily use, and whether installation will be straightforward for IT staff or end users.

Maximum Memory64 GB
SATA Interfaces6 per node
Power Supply Wattage2000W each
64-bit ProcessingDDR4 SDRAMHot-Swap BackplanePMBus 1.2

Key Product Advantages

The SYS-5039MS-H12TRF delivers significant advantages for organizations requiring dense compute deployment without compromising reliability or manageability.

These strengths make the product easier to deploy and manage in real environments, especially where reliability, usability, and day-to-day operational continuity matter. Notable benefits include High-Density Architecture, Enterprise-Grade Reliability.

High-Density Architecture

Twelve independent server nodes in a single 3U chassis maximize rack space utilization while maintaining serviceability through hot-swap components and tool-less design elements.

  • 12-node MicroCloud configuration
  • Individual motherboard per node
  • Consolidated power and cooling

Enterprise-Grade Reliability

Dual 2000W titanium-level power supplies with PMBus 1.2 monitoring provide redundant power delivery, while the hot-swap backplane ensures continuous operation during maintenance procedures.

  • Redundant power supplies
  • Hot-swap capable
  • Enterprise monitoring

Deployment / Use Cases

This SuperServer barebone is ideally suited for environments where compute density, scalability, and consistent performance are paramount. The 12-node architecture allows for flexible workload distribution across physical or virtualized infrastructures.

Common deployment scenarios include hyper-converged infrastructure foundations, private cloud platforms, high-performance computing clusters, and scalable web hosting environments. The system's modular design supports gradual expansion as computational requirements grow.

Relevant factors for this section include Number of Nodes, Number of Processors Supported, Processor Socket, Chipset Manufacturer. When those points are considered together, they give buyers a clearer picture of how the product is equipped, how it fits into deployment, and what kind of day-to-day role it is meant to support.

Virtualization Host

Deploy as a consolidated virtualization platform, with each node hosting multiple virtual machines while maintaining isolation and dedicated resources for different applications or tenants.

Scale-Out Compute

Implement as building blocks for horizontally scalable applications, where additional nodes can be activated to handle increasing transaction volumes or computational workloads.

Physical Profile

The system occupies a standard 3U rack space with dimensions of 5.21" (132.33 mm) in height, 17.50" (444.50 mm) in width, and 29.50" (749.30 mm) in depth. The black chassis features a professional server-grade finish suitable for data center environments. At approximately 131.99 lb (59870 g), the system requires proper rack mounting and weight consideration during installation.

The physical profile is practical for deployment planning because the dimensions and weight are clearly defined: 3U, 17.50" (444.50 mm), 29.50" (749.30 mm), 131.99 lb (59870 g). This helps confirm rack, shelf, desk, or cabinet fit before installation.

Color
Black
Dimensions
Width
17.50" (444.50 mm)
Depth
29.50" (749.30 mm)
Height
3U
Weight
131.99 lb (59870 g)

What's in the Box

This barebone system includes all necessary components for immediate deployment, minimizing additional procurement requirements.

SuperServer SYS-5039MS-H12TRF (Black)
12 x Super X11SSE-F Motherboard
1 x 3U Chassis
12 x AOM-PDB-MC12S
12 x AOM-CGP-I2M-O-P
12 x AOM-BPN-MC12S
1 x CSE939HS MicroCloud (12 nodes) Hot-Swap Backplane
1 x 11.5CM KVM/SUVI 36 PIN TO 9 PIN/15 PIN 2USB, 30/28AWG
1 x CAUTION LABEL FOR REDUNDANT PWR SYSTEMS
12 x LP CPU Heat Sink for 12-node Micro Cloud Series Servers
2 x AC-DC 2000W, Titanium Level, Redundancy, 1U, PMBus 1.2, 360x76x40 mm,HF,RoHS/REACH
[custom-highlights]

Highlights

  • 12-node MicroCloud architecture in a single 3U chassis
  • Supports Intel Xeon processors (Socket H4 LGA-1151)
  • Up to 64GB DDR4-2133 memory across 4 slots per node
  • Six Serial ATA/600 interfaces for fast storage connectivity
  • Dual 2000W titanium-level redundant power supplies
  • Gigabit Ethernet for high-speed network uplinks
  • Hot-swap backplane for continuous operation during maintenance
  • Includes 12 CPU heat sinks and complete mounting hardware
  • 3-year limited warranty for peace of mind
  • Environmentally friendly design meeting RoHS/REACH standards
[/custom-highlights][custom-specifications]

Specifications

Specifications
ManufacturerSupermicro Computer, Inc
Manufacturer Part NumberSYS-5039MS-H12TRF
Brand NameSupermicro
Product LineSuperServer
Product Model5039MS-H12TRF
Product NameSuperServer SYS-5039MS-H12TRF (Black)
Product TypeServer Barebone System
Processor
Number of Nodes12
Number of Processors Supported1
Processor SocketSocket H4 LGA-1151
Processor SupportedXeon
64-bit ProcessingYes
Chipset
Chipset ManufacturerIntel
Chipset ModelC236
Memory
Maximum Memory Supported64 GB
Memory TechnologyDDR4 SDRAM
Memory StandardDDR4-2133/PC4-17000
Total Number of Memory Slots4
Controllers
Controller TypeSerial ATA/600
Network & Communication
Ethernet TechnologyGigabit Ethernet
Interfaces/Ports
Total Number of USB Ports3
Number of USB 3.0 Ports1
Number of SATA Interfaces6
Power Description
Input Voltage120 V AC,230 V AC
Number of Power Supplies Installed2
Maximum Power Supply Wattage2 kW
Physical Characteristics
Color FamilyBlack
Product ColorBlack
Form FactorRack-mountable
Rack Height3U
Height5.21" (132.33 mm)
Width17.50" (444.50 mm)
Depth29.50" (749.30 mm)
Weight (Approximate)131.99 lb (59870 g)
Miscellaneous
Package ContentsSuperServer SYS-5039MS-H12TRF (Black) 12 x Super X11SSE-F Motherboard 1 x 3U Chassis 12 x AOM-PDB-MC12S 12 x AOM-CGP-I2M-O-P 12 x AOM-BPN-MC12S 1 x CSE939HS MicroCloud (12 nodes) Hot-Swap Backplane 1 x 11.5CM KVM/SUVI 36 PIN TO 9 PIN/15 PIN 2USB, 30/28AWG 1 x CAUTION LABEL FOR REDUNDANT PWR SYSTEMS 12 x LP CPU Heat Sink for 12-node Micro Cloud Series Servers 2 x AC-DC 2000W, Titanium Level, Redundancy, 1U, PMBus 1.2, 360x76x40 mm,HF,RoHS/REACH
Environmentally FriendlyYes
Warranty
Limited Warranty3 Year
[/custom-specifications][custom-faq]

FAQ

What processors are compatible with this SuperServer barebone?

This system supports Intel Xeon processors using the Socket H4 LGA-1151 interface. The platform is built on the Intel C236 chipset, which provides enterprise-grade features including support for 64-bit processing, enhanced reliability, and management capabilities suitable for server workloads.

How much memory can each node support?

Each of the 12 nodes supports up to 64GB of DDR4 SDRAM across four memory slots. The memory operates at DDR4-2133/PC4-17000 speeds, providing sufficient bandwidth for demanding applications while maintaining compatibility with standard server memory modules.

What storage interfaces are available on this system?

Each node includes six Serial ATA/600 interfaces, delivering fast data transfer rates for direct-attached storage devices. This configuration supports multiple drives per node, enabling RAID setups or tiered storage architectures without requiring additional controller cards.

What power supply configuration does this server use?

The system includes two 2000W AC-DC power supplies operating in redundant configuration. These titanium-level power supplies feature PMBus 1.2 monitoring and support input voltages of 120V AC and 230V AC, providing high efficiency and reliability for continuous operation in enterprise environments.

What is included in the package contents?

The complete barebone package includes the SuperServer SYS-5039MS-H12TRF chassis, 12 Super X11SSE-F motherboards, 3U chassis, hot-swap backplane, KVM adapter, caution labels, 12 CPU heat sinks, dual 2000W power supplies, and all necessary mounting hardware for immediate deployment as a 12-node server platform.

What are the physical dimensions and rack requirements?

This system occupies 3U of standard 19-inch rack space with dimensions of 5.21" height, 17.50" width, and 29.50" depth. The approximate weight is 131.99 lb, requiring proper rack mounting hardware and consideration of weight distribution in multi-unit installations.

[/custom-faq]
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Supermicro SYS-5039MS-H12TRF SuperServer Barebone - 12-Node MicroCloud - 3U Rackmount - Intel Xeon LGA-1151 - 64GB DDR4 - 2 x 2000W PSU
MSRP: $11,212.95
$11,212.95
$9,797.99
Save: $1,414.96 (12.62%)
Out of stock